In a new study led by Lynette Loke, of Peter Todd’s lab, we explore the effects of habitat configuration on biodiversity in an experimental seawall system. It is a generally accepted ecological principle that a larger total area of habitat can support greater biodiversity; less certain is the effect of the spatial configuration of this habitat. This question is of general relevance for conservation in today’s increasingly fragmented landscapes. Although there has been much speculation on this topic, there have been few experimental studies at scales incorporating multiple discrete patches. Lynette sought to remedy this with her experimental system of concrete tiles placed on artificial seawalls (pictured below). The tiles can generally support more biodiversity than the unadorned seawalls and therefore constitute “habitat”. Colonising organisms include various species of snail, alga and polychaete worm.

We found that, as expected, seawalls with more tiles had higher biodiversity—the classic positive species–area result. More intriguingly, we found some evidence that biodiversity peaked at an intermediate level of tile clustering (e.g., middle panel below, where black=tile and white=no tile). We speculated that this could be because the relatively large inter-patch distances in the intermediate configuration make it hard for species to traverse the landscape, leading to greater differentiation in species composition in the separate patches over time.

Effects of habitat area and spatial configuration on biodiversity in an experimental intertidal community. Lynette H. L. Loke, Ryan A. Chisholm, Peter A. Todd. Ecology (in press)

In a new paper led by Nadiah in Methods in Ecology and Evolution, we tackled an important question for ecological modellers: how do we predict an ecosystem’s behaviour when the data needed to parameterise a model are lacking? For example, managers may be considering different pest-control programmes, which have the potential to lead to positive or negative outcomes for native species. These outcomes can in principle be predicted using dynamical models, but experts rarely have the data needed to parameterise the model, e.g., the interaction strengths for every pair of species. Is there a way to obtain predictions of species responses from the model anyway?

Recently, a suite of techniques known as Qualitative Modelling have become popular because they hold the promise of overcoming common data limitations. However, we showed that current probabilistic versions of these techniques are not robust to equally defensible variations in the sampling method used, leading to the paradoxical result that quite different probabilities can be obtained for the same predicted outcome. Worse, the degree of difference can be large enough to change the management decision that would result. Similar paradoxical results are described by philosophers, arising in simple thought-experiments involving the Principle of Indifference (e.g. Bertrand’s paradox). The paradoxes occur when there isn’t sufficient background information about the problem to specify the parameter space.

To resolve the problem, we adopted a non-probabilistic representation of parameter-value uncertainty: every value of an unknown parameter is simply classified as ‘possible’ or ‘impossible’. We show how Boolean analysis of the resulting possible combinations of positive and negative species responses can be used to summarise the model predictions in a way that is interpretable to conservation decision-makers. Importantly, the predictions obtained in this way subsume the various contradictory predictions obtained from probabilistic approaches, and do not require modellers to implicitly overstate their knowledge about the system by specifying a parameter space and sampling distribution.

See also Nadiah’s longer summary on her blog.

Kristensen, N. P., R. A. Chisholm, E. McDonald‐Madden, 2019. Dealing with high uncertainty in qualitative network models using Boolean analysis. Methods in Ecology and Evolution (in press)

An example result from our new Boolean qualitative modelling approach, analysing the predicted responses of Macquarie Island species to suppression of feral rabbits.

In November 2017, Joanna Coleman and Roman Carrasco held a workshop at National University of Singapore, where biodiversity researchers from around Southeast Asia met to discuss top research questions for the future. The outcome of the workshop has now been published in Biological Conservation, in the form of 100 questions that can guide research in the coming years. The questions cover a range of topics, from the drivers of biodiversity loss to the impacts on humans.

Coleman, J., J. S. Ascher, D. Bickford, D. Buchori, A. Cabanban, R. A. Chisholm, K. Y. Chong, P. Christie, G. R. Clements, T. E. E. dela Cruz, W. Dressler, D. P. Edwards, C. M. Francis, D. A. Friess, X. Giam, L. Gibson, D. Huang, A. C. Hughes, Z. Jaafar, A. Jain, L. P. Koh, E. P. Kudavidanage, B. Lee, J. Lee, T. M. Lee, M. Leggett, B. Leimona, M. Linkie, M. Luskin, A. Lynam, E. Meijaard, V. Nijman, A. Olsson, S. Page, P. Parolin, K. S.-H. Peh, M. R. Posa, G. W. Prescott, S. A. Rahman, S. J. Ramchunder, M. Rao, J. Reed, D. R. Richards, E. Slade, R. Steinmetz, P. Y. Tan, D. Taylor, P. A. Todd, S. T. Vo, E. L. Webb, A. Yee, A. D. Ziegler, and L. R. Carrasco. 2019. One hundred top research questions for biodiversity conservation in Southeast Asia. Biological Conservation (in press).

Ryan has been promoted to Associate Professor with tenure, with retrospective effect from 1 January 2019!

Deepthi has successfully defended her thesis, titled “What determines species diversity on islands and island habitats?” Congratulations, Dr Chimalakonda!

Martin Trappe has joined the lab as a new Senior Post-doctoral Research Fellow. Martin is a physicist with a background in quantum mechanics and density functional theory. He has worked as a post-doc for the last several years in the Centre for Quantum Technologies at NUS and will continue a 50% appointment there. In our lab, Martin will be working on mathematical models of environmental variance under our Singapore–Israel research grant and looking at applying some theoretical physics techniques to many-body problems in ecology. Welcome, Martin!

Last week Prof. Nadav Shnerb from Bar-Ilan University in Israel visited the lab. This visit was part of a collaboration between our two labs under a recently awarded Singapore–Israel research grant. The purpose of the grant is to allow us to unify and further develop models of ecological community dynamics that incorporate temporal environmental variance. Our two labs have been working independently on these models for the past several years. During Shnerb’s visit last week, we spent many stimulating hours working through mathematics on the whiteboard and engaging in vigorous conceptual discussions. We look forward to a reciprocal visit in the coming year or two.

Tak attended the Annual Ecological Society of America (ESA) Meeting, held in New Orleans from 5th to 10th August. This is one of the biggest conferences in the field of Ecology, with thousands of attendants.

During the conference, Tak presented new work from our lab on the spatial scaling of relationships between species richness and productivity. The work involves using a neutral community model to make quantitative predictions on how these relationships change with increasing spatial scale. These predictions form a baseline against which to compare results from more complex models. Tak obtained valuable feedback during and after his presentation.

The conference was also a good opportunity for Tak to meet up with colleagues and collaborators. These included Nadav Shnerb from Bar-Ilan University, who is collaborating with us on the effects of temporal environmental variation on patterns of biodiversity in plant communities.

Ryan recently visited Florian Hartig’s lab in Regensburg, Germany. Florian is a theoretical ecologist whose research interests in community ecology overlap with those of our lab. Florian and Ryan started work on some new collaborative projects, also involving Lisa Hülsmann. Ryan presented a seminar about our lab’s work on island biogeography.

Tak attended The Annual Meeting of the Society for Mathematical Biology & the Japanese Society for Mathematical Biology, which was held from 9 to 12 July at the University of Sydney, Australia (http://conferences.science.unsw.edu.au/SMB2018/).

After acclimatising to the austral winter, Tak presented new work by the Chisholm Lab that uses mathematical models to explain the shape of species–area relationships on islands, and obtained valuable feedback. He also re-united with researchers he had met in previous years, as well as engaging with other researchers: there were interesting conversations on hot topics in theoretical ecology and mathematical biology in general. Furthermore, Tak attended many talks and poster presentations, where he absorbed fresh ideas that could serve as inspiration for his own work.

Sydney University